epi2me fastq barcoding method Search Results


epi2me fastq antimicrobial resistance workflow  (Oxford Nanopore)
90
Oxford Nanopore epi2me fastq antimicrobial resistance workflow
Enriched irrigation water (Water) was artificially contaminated with 10-fold dilutions of E . coli EDL933_2 (+Ecoli) with a starting concentration of 7 x 10 8 CFU/ml (Water+Ecoli1). Reads were analyzed by the <t>EPI2ME</t> WIMP workflow. Bacterial species contributing more than 1% of the classified reads are shown and the sum of the remaining species identified are included as “Other”.
Epi2me Fastq Antimicrobial Resistance Workflow, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/epi2me+fastq+barcoding+method/epi2me/pmc07808635-154-13-18
Average 90 stars, based on 1 article reviews
epi2me fastq antimicrobial resistance workflow - by Bioz Stars, 2026-10
90/100 stars
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epi2me platform  (Metrichor Ltd)
90
Metrichor Ltd epi2me platform
Bioinformatics tools for the identification of plant viruses using nanopore sequencing.
Epi2me Platform, supplied by Metrichor Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/epi2me+fastq+barcoding+method/epi2me+platform/pmc09358452-156-16-15
Average 90 stars, based on 1 article reviews
epi2me platform - by Bioz Stars, 2026-10
90/100 stars
  Buy from Supplier

Image Search Results


Enriched irrigation water (Water) was artificially contaminated with 10-fold dilutions of E . coli EDL933_2 (+Ecoli) with a starting concentration of 7 x 10 8 CFU/ml (Water+Ecoli1). Reads were analyzed by the EPI2ME WIMP workflow. Bacterial species contributing more than 1% of the classified reads are shown and the sum of the remaining species identified are included as “Other”.

Journal: PLoS ONE

Article Title: Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

doi: 10.1371/journal.pone.0245172

Figure Lengend Snippet: Enriched irrigation water (Water) was artificially contaminated with 10-fold dilutions of E . coli EDL933_2 (+Ecoli) with a starting concentration of 7 x 10 8 CFU/ml (Water+Ecoli1). Reads were analyzed by the EPI2ME WIMP workflow. Bacterial species contributing more than 1% of the classified reads are shown and the sum of the remaining species identified are included as “Other”.

Article Snippet: We identified the antimicrobial resistance genes present in our sequenced genomes using the EPI2ME Fastq Antimicrobial Resistance workflow (Oxford Nanopore Technologies).

Techniques: Concentration Assay

A) Direct comparison of quantitative qPCR detection with de novo assembly limits by nanopore sequencing informs detection and classification of STECs. B) Pipeline for detection and classification of STECs in enriched irrigation water using nanopore sequencing and EPI2ME cloud-based services to identify reads of a desired taxa for de novo assembly with Flye and in silico analysis.

Journal: PLoS ONE

Article Title: Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

doi: 10.1371/journal.pone.0245172

Figure Lengend Snippet: A) Direct comparison of quantitative qPCR detection with de novo assembly limits by nanopore sequencing informs detection and classification of STECs. B) Pipeline for detection and classification of STECs in enriched irrigation water using nanopore sequencing and EPI2ME cloud-based services to identify reads of a desired taxa for de novo assembly with Flye and in silico analysis.

Article Snippet: We identified the antimicrobial resistance genes present in our sequenced genomes using the EPI2ME Fastq Antimicrobial Resistance workflow (Oxford Nanopore Technologies).

Techniques: Comparison, Nanopore Sequencing, In Silico

Bioinformatics tools for the identification of plant viruses using nanopore sequencing.

Journal: Frontiers in Microbiology

Article Title: Nanopore sequencing technology and its application in plant virus diagnostics

doi: 10.3389/fmicb.2022.939666

Figure Lengend Snippet: Bioinformatics tools for the identification of plant viruses using nanopore sequencing.

Article Snippet: The raw FAST5 reads were uploaded to the online server for base calling through the Metrichor EPI2ME platform.

Techniques: Sequencing, Software, Nanopore Sequencing, Variant Assay